opalr - 'Opal' Data Repository Client and 'DataSHIELD' Utils

Data integration Web application for biobanks by 'OBiBa'. 'Opal' is the core database application for biobanks. Participant data, once collected from any data source, must be integrated and stored in a central data repository under a uniform model. 'Opal' is such a central repository. It can import, process, validate, query, analyze, report, and export data. 'Opal' is typically used in a research center to analyze the data acquired at assessment centres. Its ultimate purpose is to achieve seamless data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal' web services and to perform operations on the R server side. 'DataSHIELD' administration tools are also provided.

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8.66 score 3 stars 3 dependents 213 scripts 924 downloads

resourcer - Resource Resolver

A resource represents some data or a computation unit. It is described by a URL and credentials. This package proposes a Resource model with "resolver" and "client" classes to facilitate the access and the usage of the resources.

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6.26 score 3 stars 2 dependents 40 scripts 842 downloads

micar - 'Mica' Data Web Portal Client

'Mica' is a server application used to create data web portals for large-scale epidemiological studies or multiple-study consortia. 'Mica' helps studies to provide scientifically robust data visibility and web presence without significant information technology effort. 'Mica' provides a structured description of consortia, studies, annotated and searchable data dictionaries, and data access request management. This 'Mica' client allows to perform data extraction for reporting purposes.

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4.81 score 32 scripts 241 downloads

odbc.resourcer - Open Database Connectivity Resource Resolver

A database resource that is accessible through the Open Database Connectivity ('ODBC') API. This package uses the Resource model, with URL "resolver" and "client", to dynamically discover and make accessible tables stored in a 'MS SQL Server' database. For more details see Marcon (2021) <doi:10.1371/journal.pcbi.1008880>.

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4.60 score 3 scripts 187 downloads

s3.resourcer - S3 Resource Resolver

A S3 resource is provided by Amazon Web Services S3 or a S3-compatible object store (such as Minio). The resource can be a tidy file to be downloaded from the object store, or a data lake (such as Delta Lake) Parquet file to be read by Apache Spark.

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2.70 score 3 scripts 212 downloads